Package: RSiena 1.4.19

Tom A.B. Snijders

RSiena: Siena - Simulation Investigation for Empirical Network Analysis

The main purpose of this package is to perform simulation-based estimation of stochastic actor-oriented models for longitudinal network data collected as panel data. Dependent variables can be single or multivariate networks, which can be directed, non-directed, or two-mode; and associated actor variables. There are also functions for testing parameters and checking goodness of fit. An overview of these models is given in Snijders (2017), <doi:10.1146/annurev-statistics-060116-054035>.

Authors:Tom A.B. Snijders [cre, aut], Ruth M. Ripley [aut], Krists Boitmanis [aut, ctb], Christian Steglich [aut, ctb], Johan Koskinen [ctb], Nynke M.D. Niezink [aut, ctb], Viviana Amati [aut, ctb], Christoph Stadtfeld [ctb], James Hollway [ctb], Per Block [ctb], Robert Krause [ctb], Charlotte Greenan [ctb], Josh Lospinoso [ctb], Michael Schweinberger [ctb], Mark Huisman [ctb], Felix Schoenenberger [aut, ctb], Mark Ortmann [ctb], Marion Hoffman [ctb], Robert Hellpap [ctb], Alvaro Uzaheta [ctb], Steffen Triebel [ctb]

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NEWS

# Install 'RSiena' in R:
install.packages('RSiena', repos = c('https://stocnet.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/stocnet/rsiena/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • HN3401 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • HN3403 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • HN3404 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • HN3406 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • N3401 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • N3403 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • N3404 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • N3406 - Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.
  • allEffects - Internal data frame used to construct effect objects.
  • s501 - Network 1 data: excerpt from "Teenage Friends and Lifestyle Study" data.
  • s502 - Network 2 data: excerpt from "Teenage Friends and Lifestyle Study" data.
  • s503 - Network 3 data: excerpt from "Teenage Friends and Lifestyle Study" data.
  • s50a - Alcohol use data: excerpt from "Teenage Friends and Lifestyle Study" data
  • s50s - Smoking data: excerpt from "Teenage Friends and Lifestyle Study" data
  • tmp3 - Van de Bunt's Freshman dataset, time point 3
  • tmp4 - Van de Bunt's Freshman dataset, time point 4

On CRAN:

longitudinal-datarsienasocial-network-analysisstatistical-network-analysisstatistics

9.86 score 101 stars 1 packages 334 scripts 1.1k downloads 29 mentions 50 exports 4 dependencies

Last updated 10 days agofrom:8f25c0bf88. Checks:OK: 7 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-win-x86_64NOTEOct 27 2024
R-4.5-linux-x86_64NOTEOct 27 2024
R-4.4-win-x86_64OKOct 27 2024
R-4.4-mac-x86_64OKOct 27 2024
R-4.4-mac-aarch64OKOct 27 2024
R-4.3-win-x86_64OKOct 27 2024
R-4.3-mac-x86_64OKOct 27 2024
R-4.3-mac-aarch64OKOct 27 2024

Exports:BehaviorDistributionbehaviorExtractioncoCovarcoDyadCovardescriptives.sienaGOFdyadicCoveffectsDocumentationfunnelPlotgetEffectsincludeEffectsincludeGMoMStatisticsincludeInteractionincludeTimeDummyIndegreeDistributioniwlsmmeta.tablemixedTriadCensusmodel.createMultipar.RSienanetworkExtractionOutdegreeDistributionprint.xtable.sienaFitprint01Reportscore.TestsetEffectsiena.tablesiena07siena08sienaAlgorithmCreatesienaCompositionChangesienaCompositionChangeFromFilesienaDataConstraintsienaDataCreatesienaDependentsienaGOFsienaGroupCreatesienaModelCreatesienaNetsienaNodeSetsienaTimeTestsparseMatrixExtractiontestSame.RSienaTriadCensusupdateSpecificationupdateThetavarCovarvarDyadCovarWald.RSienaxtablextable.sienaFit

Dependencies:latticeMASSMatrixxtable

Readme and manuals

Help Manual

Help pageTopics
Simulation Investigation for Empirical Network AnalysisRSiena-package RSiena
Internal data frame used to construct effect objects.allEffects
Function to create a constant covariate objectcoCovar
Function to create a constant dyadic covariate object.coDyadCovar
Allow editing of a sienaEffects object if a gui is available.edit.sienaEffects
Function to create a table of documentation of effect names, short names etc.effectsDocumentation
Plot function for a list of sienaFit objectsfunnelPlot
Function to create a Siena effects objectgetEffects sienaEffects sienaGroupEffects
Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.HN3401 hn3401 HN3403 HN3404 HN3406
Function to include effects in a Siena modelincludeEffects
Function to include GMoM statistics in a Siena modelincludeGMoMStatistics
Function to create user-specified interactions for a Siena model.includeInteraction
Function to include time dummy effects in a Siena modelincludeTimeDummy
Function to fit an iterated weighted least squares model.iwlsm iwlsm.default iwlsm.formula predict.iwlsm print.iwlsm psi.iwlsm
Network data: excerpt from "Dutch Social Behavior Data Set" of Chris Baerveldt.N3401 n3401 N3403 N3404 N3406
Functions to plot assessment of time heterogeneity of parametersplot.sienaTimeTest
Print methods for Siena effects objectsprint.sienaEffects print.summary.sienaEffects summary.sienaEffects
Methods for processing sienaMeta objectsmeta.table plot.sienaMeta print.sienaMeta print.summary.sienaMeta summary.sienaMeta
Print method for Wald and score tests for RSiena resultsprint.sienaTest sienaTest.methods
Function to produce the Siena01 report from R objectsprint01Report
Network data: excerpt from "Teenage Friends and Lifestyle Study" data.s50
Network 1 data: excerpt from "Teenage Friends and Lifestyle Study" data.s501
Network 2 data: excerpt from "Teenage Friends and Lifestyle Study" data.s502
Network 3 data: excerpt from "Teenage Friends and Lifestyle Study" data.s503
Alcohol use data: excerpt from "Teenage Friends and Lifestyle Study" datas50a
Smoking data: excerpt from "Teenage Friends and Lifestyle Study" datas50s
Function to set various columns in an effects object in a Siena model.setEffect
Function to estimate parameters in a Siena modelsiena07
Function to perform a meta analysis of a collection of Siena fits.siena08 sienaMeta
Function to create an object containing the algorithm specifications for parameter estimation in RSienamodel.create sienaAlgorithm sienaAlgorithmCreate sienaModel sienaModelCreate
Functions to create a Siena composition change objectsienaCompositionChange sienaCompositionChangeFromFile
Function to change the values of the constraints between networks.sienaDataConstraint
Function to create a Siena data objectsiena sienaDataCreate
Function to create a dependent variable for a Siena modelsienaDependent sienaNet
Methods for processing sienaFit objects, produced by 'siena07'.print.sienaFit print.summary.sienaFit print.xtable.sienaFit siena.table sienaFit sienaFit.methods summary.sienaFit xtable.sienaFit
Functions to assess goodness of fit for SAOMsdescriptives.sienaGOF plot.sienaGOF sienaGOF
Auxiliary functions for goodness of fit assessment by 'sienaGOF'BehaviorDistribution behaviorExtraction dyadicCov IndegreeDistribution mixedTriadCensus networkExtraction OutdegreeDistribution sienaGOF-auxiliary sparseMatrixExtraction TriadCensus
Function to group together several Siena data objectssienaGroup sienaGroupCreate
Function to create a node setsienaNodeSet
Functions to assess and account for time heterogeneity of parameterssienaTimeTest
Versions of FRANinitializeFRAN maxlikec simstats0c terminateFRAN
Summary method for Iterative Weighted Least Squares Modelsprint.summary.iwlsm summary.iwlsm
van de Bunt's Freshman dataset, time point 3tmp3
van de Bunt's Freshman dataset, time point 4tmp4
A function to update the initial values of theta, and a function to update an effects object.updateSpecification updateTheta
Function to create a changing covariate object.varCovar
Function to create a changing dyadic covariate object.varDyadCovar
Wald and score tests for RSiena resultsMultipar.RSiena score.Test scoreTest sienaTest testSame.RSiena Wald.RSiena
Access xtable in package xtablextable