Package: manynet 1.3.3
James Hollway
manynet: Many Ways to Make, Modify, Map, Mark, and Measure Myriad Networks
Many tools for making, modifying, mapping, marking, measuring, and motifs and memberships of many different types of networks. All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects, and on one-mode, two-mode (bipartite), and sometimes three-mode networks. The package includes functions for importing and exporting, creating and generating networks, modifying networks and node and tie attributes, and describing and visualizing networks with sensible defaults.
Authors:
manynet_1.3.3.tar.gz
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manynet_1.3.3.tgz(r-4.4-any)manynet_1.3.3.tgz(r-4.3-any)
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manynet.pdf |manynet.html✨
manynet/json (API)
NEWS
| # Install 'manynet' in R: |
| install.packages('manynet', repos = c('https://stocnet.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/stocnet/manynet/issues
- fict_friends - One-mode undirected Friends character scene co-appearances
- fict_greys - One-mode undirected network of characters hook-ups on Grey's Anatomy TV show
- fict_lotr - One-mode network of Lord of the Rings character interactions
- fict_potter - Six complex one-mode support data in Harry Potter books
- fict_thrones - One-mode Game of Thrones kinship
- irps_blogs - One-mode directed network of links between US political blogs
- irps_books - One-mode undirected network of co-purchased books about US politics on Amazon
- irps_usgeo - One-mode undirected network of US state contiguity
- irps_wwi - One-mode signed network of relationships between European major powers
- ison_adolescents - One-mode subset of the adolescent society network
- ison_algebra - Multiplex graph object of friends, social, and task ties
- ison_brandes - One-mode and two-mode centrality demonstration networks
- ison_dolphins - One-mode, undirected network of frequent associations in a dolphin pod
- ison_hightech - One-mode multiplex, directed network of managers of a high-tech company
- ison_karateka - One-mode karateka network
- ison_koenigsberg - One-mode Seven Bridges of Koenigsberg network
- ison_laterals - Two-mode projection examples
- ison_lawfirm - One-mode lawfirm
- ison_marvel_relationships - Multilevel two-mode affiliation, signed one-mode networks of Marvel comic book characters
- ison_marvel_teams - Multilevel two-mode affiliation, signed one-mode networks of Marvel comic book characters
- ison_monks - Multiplex network of three one-mode signed, weighted networks and a three-wave longitudinal network of monks
- ison_networkers - One-mode EIES dataset
- ison_physicians - Four multiplex one-mode physician diffusion data
- ison_southern_women - Two-mode southern women
- ison_starwars - Seven one-mode Star Wars character interactions
diffusion-modelsgraphsnetwork-analysis
Last updated 12 days agofrom:fb80038202. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 10 2024 |
| R-4.5-win | OK | Nov 10 2024 |
| R-4.5-linux | OK | Nov 10 2024 |
| R-4.4-win | NOTE | Nov 10 2024 |
| R-4.4-mac | NOTE | Nov 10 2024 |
| R-4.3-win | NOTE | Nov 10 2024 |
| R-4.3-mac | NOTE | Nov 10 2024 |
Exports:.E.G.N%>%add_infoadd_node_attributeadd_nodesadd_tie_attributeadd_tiesaesarrange_tiesas_diffnetas_diffusionas_edgelistas_graphAMas_igraphas_matrixas_networkas_nodelistas_sienaas_tidygraphautographdautographrautographsbind_node_attributesbind_tiesclear_glossarycluster_concorcluster_cosinecluster_hierarchicalcreate_componentscreate_corecreate_degreecreate_egocreate_emptycreate_explicitcreate_filledcreate_latticecreate_motifscreate_ringcreate_starcreate_treedelete_nodesdelete_tiesextract_tutefilter_nodesfilter_tiesfrom_egosfrom_slicesfrom_subgraphsfrom_tiesfrom_wavesgenerate_citationsgenerate_configurationgenerate_firegenerate_islandsgenerate_mangenerate_permutationgenerate_randomgenerate_scalefreegenerate_smallworldgenerate_utilitiesggplotggsaveggtitleglossgraphrgraphsgraphtguidesis_acyclicis_aperiodicis_attributedis_complexis_connectedis_directedis_dynamicis_edgelistis_eulerianis_graphis_igraphis_labelledis_listis_longitudinalis_manynetis_multiplexis_perfect_matchingis_signedis_twomodeis_uniplexis_weightedis.tbl_graphjoin_nodesjoin_tiesk_elbowk_silhouettek_strictlabslayout_tbl_graph_alluviallayout_tbl_graph_concentriclayout_tbl_graph_configurationlayout_tbl_graph_dyadlayout_tbl_graph_hexadlayout_tbl_graph_hierarchylayout_tbl_graph_ladderlayout_tbl_graph_lineagelayout_tbl_graph_multilevellayout_tbl_graph_pentadlayout_tbl_graph_quadlayout_tbl_graph_railwaylayout_tbl_graph_tetradlayout_tbl_graph_triadmany_palettesmutatemutate_nodesmutate_tiesna_to_meanna_to_zeronet_adhesionnet_assortativitynet_balancenet_betweennessnet_by_brokeragenet_by_dyadnet_by_mixednet_by_quadnet_by_tetradnet_by_triadnet_changenet_closenessnet_cohesionnet_componentsnet_congruencynet_connectednessnet_corenet_correlationnet_degreenet_densitynet_diameternet_dimsnet_diversitynet_efficiencynet_eigenvectornet_equivalencynet_factionsnet_harmonicnet_hazardnet_heterophilynet_immunitynet_indegreenet_independencenet_infection_completenet_infection_peaknet_infection_totalnet_lengthnet_modularitynet_node_attributesnet_nodesnet_outdegreenet_reachnet_reciprocitynet_recoverynet_reproductionnet_richclubnet_richnessnet_scalefreenet_smallworldnet_spatialnet_stabilitynet_tie_attributesnet_tiesnet_transitivitynet_transmissibilitynet_upperboundnetwork_adhesionnetwork_assortativitynetwork_balancenetwork_betweennessnetwork_brokerage_censusnetwork_changenetwork_closenessnetwork_cohesionnetwork_componentsnetwork_congruencynetwork_connectednessnetwork_corenetwork_degreenetwork_densitynetwork_diameternetwork_dimsnetwork_dims.data.framenetwork_dims.igraphnetwork_dims.matrixnetwork_dims.networknetwork_diversitynetwork_dyad_censusnetwork_efficiencynetwork_eigenvectornetwork_equivalencynetwork_factionsnetwork_harmonicnetwork_hazardnetwork_heterophilynetwork_immunitynetwork_indegreenetwork_independencenetwork_infection_lengthnetwork_lengthnetwork_mixed_censusnetwork_modularitynetwork_node_attributesnetwork_nodesnetwork_outdegreenetwork_reachnetwork_reciprocitynetwork_reproductionnetwork_richclubnetwork_richnessnetwork_scalefreenetwork_smallworldnetwork_spatialnetwork_stabilitynetwork_tie_attributesnetwork_tiesnetwork_transitivitynetwork_transmissibilitynetwork_triad_censusnetwork_upperboundnode_adoption_timenode_alphanode_attributenode_authoritynode_automorphic_equivalencenode_betweennessnode_bridgesnode_brokerage_censusnode_brokeringnode_brokering_activitynode_brokering_exclusivitynode_by_brokeragenode_by_dyadnode_by_exposurenode_by_pathnode_by_quadnode_by_tetradnode_by_tienode_by_triadnode_closenessnode_componentsnode_constraintnode_corenode_corenessnode_degnode_degreenode_distancenode_diversitynode_eccentricitynode_edge_betweennessnode_efficiencynode_effsizenode_eigenvectornode_equivalencenode_equivalencynode_exposurenode_fast_greedynode_flownode_fluidnode_harmonicnode_heterophilynode_hierarchynode_hubnode_in_adopternode_in_automorphicnode_in_betweennessnode_in_brokeringnode_in_communitynode_in_componentnode_in_eigennode_in_equivalencenode_in_fluidnode_in_greedynode_in_infomapnode_in_leidennode_in_louvainnode_in_optimalnode_in_partitionnode_in_regularnode_in_roulettenode_in_spinglassnode_in_strongnode_in_structuralnode_in_walktrapnode_in_weaknode_indegreenode_inducednode_infomapnode_informationnode_is_corenode_is_cutpointnode_is_exposednode_is_foldnode_is_independentnode_is_infectednode_is_isolatenode_is_latentnode_is_maxnode_is_mentornode_is_minnode_is_modenode_is_neighbornode_is_pendantnode_is_randomnode_is_recoverednode_kernighanlinnode_leading_eigennode_leidennode_leveragenode_louvainnode_modenode_multidegreenode_namesnode_neighbours_degreenode_optimalnode_outdegreenode_pageranknode_path_censusnode_posnegnode_powernode_quad_censusnode_reachnode_reciprocitynode_recoverynode_redundancynode_regular_equivalencenode_richnessnode_roulettenode_spinglassnode_stressnode_strong_componentsnode_structural_equivalencenode_thresholdsnode_tie_censusnode_transitivitynode_triad_censusnode_vitalitynode_walktrapnode_weak_componentsover_membershipover_timeover_wavespkg_dataplay_diffusionplay_diffusionsplay_learningplay_segregationprint_glossaryread_cranread_dynetmlread_edgelistread_gmlread_graphmlread_matrixread_nodelistread_pajekread_ucinetrenamerename_nodesrename_tiesrun_tutescale_color_centresscale_color_ethzscale_color_iheidscale_color_rugscale_color_sdgsscale_color_uzhscale_colour_centresscale_colour_ethzscale_colour_iheidscale_colour_rugscale_colour_sdgsscale_colour_uzhscale_edge_color_centresscale_edge_color_ethzscale_edge_color_iheidscale_edge_color_rugscale_edge_color_sdgsscale_edge_color_uzhscale_edge_colour_centresscale_edge_colour_ethzscale_edge_colour_iheidscale_edge_colour_rugscale_edge_colour_sdgsscale_edge_colour_uzhscale_fill_centresscale_fill_ethzscale_fill_iheidscale_fill_rugscale_fill_sdgsscale_fill_uzhscale_sizeselect_tiesset_manynet_themesummarise_tiestable_datatheme_ethztheme_iheidtheme_rugtheme_uzhtie_attributetie_betweennesstie_closenesstie_cohesiontie_degreetie_eigenvectortie_is_bridgetie_is_cyclicaltie_is_feedbacktie_is_forbiddentie_is_imbalancedtie_is_looptie_is_maxtie_is_mintie_is_multipletie_is_pathtie_is_randomtie_is_reciprocatedtie_is_simmeliantie_is_transitivetie_is_triangulartie_is_triplettie_signstie_weightsto_acyclicto_antito_blocksto_componentsto_correlationto_cosineto_directedto_dominatingto_egoto_egosto_eulerianto_giantto_matchingto_mentoringto_mode1to_mode2to_multilevelto_namedto_no_isolatesto_onemodeto_permutedto_reciprocatedto_redirectedto_signedto_simplexto_slicesto_subgraphto_subgraphsto_tiesto_treeto_twomodeto_undirectedto_uniplexto_unnamedto_unsignedto_unweightedto_wavesto_weightedwith_graphwrite_edgelistwrite_graphmlwrite_matrixwrite_nodelistwrite_pajekwrite_ucinetxlabylab
Dependencies:cachemclicodacolorspacecpp11dplyrfansifarverfastmapgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnetworknlmepillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalesstatnet.commonstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Obtain overview of available network data | data_overview table_data |
| One-mode undirected Friends character scene co-appearances (McNulty, 2020) | fict_friends |
| One-mode undirected network of characters hook-ups on Grey's Anatomy TV show | fict_greys |
| One-mode network of Lord of the Rings character interactions | fict_lotr |
| Six complex one-mode support data in Harry Potter books (Bossaert and Meidert 2013) | fict_potter |
| One-mode Game of Thrones kinship (Glander 2017) | fict_thrones |
| Adding network glossary items | clear_glossary gloss glossary print_glossary |
| One-mode directed network of links between US political blogs (Adamic and Glance 2005) | irps_blogs |
| One-mode undirected network of co-purchased books about US politics on Amazon | irps_books |
| One-mode undirected network of US state contiguity (Meghanathan 2017) | irps_usgeo |
| One-mode signed network of relationships between European major powers (Antal et al. 2006) | irps_wwi |
| One-mode subset of the adolescent society network (Coleman 1961) | ison_adolescents |
| Multiplex graph object of friends, social, and task ties (McFarland 2001) | ison_algebra |
| One-mode and two-mode centrality demonstration networks | ison_brandes |
| One-mode, undirected network of frequent associations in a dolphin pod (Lusseau et al. 2003) | ison_dolphins |
| One-mode multiplex, directed network of managers of a high-tech company (Krackhardt 1987) | ison_hightech |
| One-mode karateka network (Zachary 1977) | ison_karateka |
| One-mode Seven Bridges of Koenigsberg network (Euler 1741) | ison_koenigsberg |
| Two-mode projection examples (Hollway 2021) | ison_laterals |
| One-mode lawfirm (Lazega 2001) | ison_lawfirm |
| Multilevel two-mode affiliation, signed one-mode networks of Marvel comic book characters (Yuksel 2017) | ison_marvel ison_marvel_relationships ison_marvel_teams |
| Multiplex network of three one-mode signed, weighted networks and a three-wave longitudinal network of monks (Sampson 1969) | ison_monks |
| One-mode EIES dataset (Freeman and Freeman 1979) | ison_networkers |
| Four multiplex one-mode physician diffusion data (Coleman, Katz, and Menzel, 1966) | ison_physicians |
| Two-mode southern women (Davis, Gardner and Gardner 1941) | ison_southern_women |
| Seven one-mode Star Wars character interactions (Gabasova 2016) | ison_starwars |
| Making networks of package dependencies | make_cran read_cran |
| Making networks with defined structures | create_components create_core create_degree create_empty create_filled create_lattice create_ring create_star create_tree make_create |
| Making ego networks through interviewing | create_ego make_ego |
| Making networks with explicit ties | create_explicit make_explicit |
| Making learning models on networks | make_learning play_learning play_segregation |
| Making motifs | create_motifs make_motifs |
| Making diffusion models on networks | make_play play_diffusion play_diffusions |
| Making unconditional and conditional random networks | generate_configuration generate_man generate_permutation generate_random generate_utilities make_random |
| Making networks from external files | make_read read_dynetml read_edgelist read_gml read_graphml read_matrix read_nodelist read_pajek read_ucinet |
| Making networks with a stochastic element | generate_citations generate_fire generate_islands generate_scalefree generate_smallworld make_stochastic |
| Making networks to external files | make_write write_edgelist write_graphml write_matrix write_nodelist write_pajek write_ucinet |
| Modifying network classes | as_diffnet as_diffusion as_edgelist as_graphAM as_igraph as_matrix as_network as_nodelist as_siena as_tidygraph manip_as |
| Node correlation | manip_correlation to_correlation to_cosine |
| Modifying network formats | manip_deformat to_simplex to_undirected to_uniplex to_unnamed to_unsigned to_unweighted |
| Joining lists of networks, graphs, and matrices | from_egos from_slices from_subgraphs from_ties from_waves manip_from |
| Modifying network levels | manip_levels to_multilevel to_onemode to_twomode |
| Modifying missing tie data | manip_miss na_to_mean na_to_zero |
| Modifying network data | add_info manip_net |
| Modifying node data | add_nodes add_node_attribute bind_node_attributes delete_nodes filter_nodes join_nodes manip_nodes mutate mutate_nodes rename rename_nodes |
| Modifying networks paths | manip_paths to_dominating to_eulerian to_matching to_mentoring to_tree |
| Network permutation | manip_permutation to_permuted |
| Modifying network formats | manip_preformat to_named to_signed to_weighted |
| Modifying networks projection | manip_project to_mode1 to_mode2 to_ties |
| Modifying network formats | manip_reformat to_acyclic to_anti to_directed to_reciprocated to_redirected |
| Modifying networks scope | manip_scope to_blocks to_ego to_giant to_no_isolates to_subgraph |
| Splitting networks into lists | manip_split to_components to_egos to_slices to_subgraphs to_waves |
| Modifying tie data | add_ties add_tie_attribute arrange_ties bind_ties delete_ties filter_ties join_ties manip_ties mutate_ties rename_ties select_ties summarise_ties |
| Easily graph networks with sensible defaults | graphr map_graphr |
| Easily graph a set of networks with sensible defaults | graphs map_graphs |
| Easily animate dynamic networks with sensible defaults | grapht map_grapht |
| Layout algorithms based on configurational positions | layout_tbl_graph_configuration layout_tbl_graph_dyad layout_tbl_graph_hexad layout_tbl_graph_pentad layout_tbl_graph_tetrad layout_tbl_graph_triad map_layout_configuration |
| Layout algorithms based on bi- or other partitions | layout_tbl_graph_alluvial layout_tbl_graph_concentric layout_tbl_graph_hierarchy layout_tbl_graph_ladder layout_tbl_graph_lineage layout_tbl_graph_multilevel layout_tbl_graph_railway map_layout_partition |
| Many palettes generator | many_palettes map_palettes |
| Many scales | map_scales scale_color_centres scale_color_ethz scale_color_iheid scale_color_rug scale_color_sdgs scale_color_uzh scale_colour_centres scale_colour_ethz scale_colour_iheid scale_colour_rug scale_colour_sdgs scale_colour_uzh scale_edge_color_centres scale_edge_color_ethz scale_edge_color_iheid scale_edge_color_rug scale_edge_color_sdgs scale_edge_color_uzh scale_edge_colour_centres scale_edge_colour_ethz scale_edge_colour_iheid scale_edge_colour_rug scale_edge_colour_sdgs scale_edge_colour_uzh scale_fill_centres scale_fill_ethz scale_fill_iheid scale_fill_rug scale_fill_sdgs scale_fill_uzh |
| Many themes | map_themes set_manynet_theme theme_ethz theme_iheid theme_rug theme_uzh |
| Core-periphery clustering algorithms | mark_core node_coreness node_is_core |
| Marking nodes based on diffusion properties | mark_diff node_is_exposed node_is_infected node_is_latent node_is_recovered |
| Marking networks features | is_acyclic is_aperiodic is_connected is_eulerian is_perfect_matching mark_features |
| Marking networks formats | is_attributed is_complex is_directed is_labelled is_multiplex is_signed is_twomode is_uniplex is_weighted mark_format |
| Marking networks classes | is_dynamic is_edgelist is_graph is_list is_longitudinal is_manynet mark_is |
| Marking nodes based on structural properties | mark_nodes node_is_cutpoint node_is_fold node_is_independent node_is_isolate node_is_mentor node_is_neighbor node_is_pendant |
| Marking nodes for selection based on measures | mark_select node_is_max node_is_min node_is_random |
| Marking ties for selection based on measures | mark_tie_select tie_is_max tie_is_min tie_is_random |
| Marking ties based on structural properties | mark_ties tie_is_bridge tie_is_feedback tie_is_loop tie_is_multiple tie_is_path tie_is_reciprocated |
| Marking ties based on structural properties | mark_triangles tie_is_cyclical tie_is_forbidden tie_is_imbalanced tie_is_simmelian tie_is_transitive tie_is_triangular tie_is_triplet |
| Describing attributes of nodes or ties in a network | measure_attributes node_attribute node_is_mode node_names tie_attribute tie_signs tie_weights |
| Measures of betweenness-like centrality and centralisation | measure_central_between net_betweenness node_betweenness node_flow node_induced node_stress tie_betweenness |
| Measures of closeness-like centrality and centralisation | measure_central_close net_closeness net_harmonic net_reach node_closeness node_distance node_eccentricity node_harmonic node_information node_reach node_vitality tie_closeness |
| Measures of degree-like centrality and centralisation | measure_central_degree net_degree net_indegree net_outdegree node_deg node_degree node_indegree node_leverage node_multidegree node_outdegree node_posneg tie_degree |
| Measures of eigenvector-like centrality and centralisation | measure_central_eigen net_eigenvector node_alpha node_authority node_eigenvector node_hub node_pagerank node_power tie_eigenvector |
| Measures of network closure | measure_closure net_congruency net_equivalency net_reciprocity net_transitivity node_equivalency node_reciprocity node_transitivity |
| Measures of network cohesion or connectedness | measure_cohesion net_adhesion net_cohesion net_components net_density net_diameter net_independence net_length |
| Measures of network infection | measure_diffusion_infection net_infection_complete net_infection_peak net_infection_total |
| Measures of network diffusion | measure_diffusion_net net_hazard net_immunity net_recovery net_reproduction net_transmissibility |
| Measures of nodes in a diffusion | measure_diffusion_node node_adoption_time node_exposure node_recovery node_thresholds |
| Measures of network topological features | measure_features net_balance net_core net_factions net_modularity net_richclub net_scalefree net_smallworld |
| Measures of network diversity | measure_heterogeneity net_assortativity net_diversity net_heterophily net_richness net_spatial node_diversity node_heterophily node_richness |
| Graph theoretic dimensions of hierarchy | measure_hierarchy net_connectedness net_efficiency net_upperbound |
| Measures of structural holes | measure_holes node_bridges node_constraint node_efficiency node_effsize node_hierarchy node_neighbours_degree node_redundancy tie_cohesion |
| Helper functions for measuring over splits of networks | measure_over over_membership over_time over_waves |
| Measures of network change | measure_periods net_change net_correlation net_stability |
| Describing network properties | measure_properties net_dims net_nodes net_node_attributes net_ties net_tie_attributes |
| Memberships of brokerage | member_brokerage node_in_brokering |
| Clique partitioning algorithms | member_cliques node_in_roulette |
| Hierarchical community partitioning algorithms | member_community_hier node_in_betweenness node_in_eigen node_in_greedy node_in_walktrap |
| Non-hierarchical community partitioning algorithms | member_community_non node_in_community node_in_fluid node_in_infomap node_in_leiden node_in_louvain node_in_optimal node_in_partition node_in_spinglass |
| Component partitioning algorithms | member_components node_in_component node_in_strong node_in_weak |
| Membership of nodes in a diffusion | member_diffusion node_in_adopter |
| Equivalence clustering algorithms | member_equivalence node_in_automorphic node_in_equivalence node_in_regular node_in_structural |
| Methods for equivalence clustering | cluster_concor cluster_cosine cluster_hierarchical model_cluster |
| Methods for selecting clusters | k_elbow k_silhouette k_strict model_kselect |
| Motifs of brokerage | motif_brokerage net_by_brokerage node_brokering_activity node_brokering_exclusivity node_by_brokerage |
| Motifs of diffusion | motif_diffusion node_by_exposure |
| Motifs at the network level | motif_net net_by_dyad net_by_mixed net_by_tetrad net_by_triad |
| Motifs at the nodal level | motif_node node_by_dyad node_by_path node_by_tetrad node_by_tie node_by_triad |
| Open and extract code from tutorials | extract_tute run_tute tutorials |
