Package: goldfish 1.6.10

Alvaro Uzaheta

goldfish: Statistical Network Models for Dynamic Network Data

Tools for fitting statistical network models to dynamic network data. Can be used for fitting both dynamic network actor models ('DyNAMs') and relational event models ('REMs'). Stadtfeld, Hollway, and Block (2017a) <doi:10.1177/0081175017709295>, Stadtfeld, Hollway, and Block (2017b) <doi:10.1177/0081175017733457>, Stadtfeld and Block (2017) <doi:10.15195/v4.a14>, Hoffman et al. (2020) <doi:10.1017/nws.2020.3>.

Authors:James Hollway [aut, dtc], Christoph Stadtfeld [aut, dtc], Marion Hoffman [aut], Alvaro Uzaheta [cre, aut], Mirko Reul [ctb], Timon Elmer [ctb], Kieran Mepham [ctb], Per Block [ctb], Xiaolei Zhang [ctb], Weigutian Ou [ctb], Emily Garvin [ctb], Siwei Zhang [ctb]

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goldfish.pdf |goldfish.html✨
goldfish/json (API)
NEWS

# Install 'goldfish' in R:

install.packages('goldfish', repos = c('https://stocnet.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stocnet/goldfish/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

Datasets:

actors - Social evolution of a university dormitory cohort
bilatchanges - International bilateral fisheries treaties
bilatnet - International bilateral fisheries treaties
calls - Social evolution of a university dormitory cohort
contigchanges - International bilateral fisheries treaties
contignet - International bilateral fisheries treaties
friendship - Social evolution of a university dormitory cohort
gdpchanges - International bilateral fisheries treaties
known.before - RFID Validity dataset
participants - RFID Validity dataset
regchanges - International bilateral fisheries treaties
rfid - RFID Validity dataset
sovchanges - International bilateral fisheries treaties
states - International bilateral fisheries treaties
video - RFID Validity dataset

On CRAN:

dynam network-modelling rem statistical-network-analysis

7.91 score 61 stars 44 scripts 228 downloads 12 exports 33 dependencies

Last updated 3 months agofrom:f2bd51ef67. Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 02 2024
R-4.5-win-x86_64	OK	Nov 02 2024
R-4.5-linux-x86_64	OK	Nov 02 2024
R-4.4-win-x86_64	OK	Nov 02 2024
R-4.4-mac-x86_64	OK	Nov 02 2024
R-4.4-mac-aarch64	OK	Nov 02 2024
R-4.3-win-x86_64	OK	Nov 02 2024
R-4.3-mac-x86_64	OK	Nov 02 2024
R-4.3-mac-aarch64	OK	Nov 02 2024

Exports:defineDependentEvents defineGlobalAttribute defineGroups_interaction defineNetwork defineNodes estimate examineChangepoints examineOutliers GatherPreprocessing glance linkEvents tidy

Dependencies:changepoint cli colorspace fansi farver generics ggplot2 glue gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer Rcpp RcppArmadillo rlang scales tibble utf8 vctrs viridisLite withr zoo

DyNAM-i: an example script

Marion Hoffman

Rendered fromdynami-example.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2024-09-02
Started: 2022-08-17

DyNAM: How to start

Christoph Stadtfeld, James Hollway, Marion Hoffman, Alvaro Uzaheta, Kieran Mepham, Timon Elmer, Mirko Reul

Rendered fromteaching1.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2024-09-02
Started: 2021-09-09

goldfish Effects

Alvaro Uzaheta and Siwei Zhang

Rendered fromgoldfishEffects.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2024-03-13
Started: 2022-07-05

The Coordination Model and Extensions

James Hollway

Rendered fromteaching2.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2024-09-03
Started: 2021-09-09

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
goldfish package	goldfish-package goldfish
Define dependent events for a model	defineDependentEvents
Define a global time-varying attribute	defineGlobalAttribute
To define the second mode of a DyNAM-i model	defineGroups_interaction
Defining a network with dynamic events	defineNetwork
Defining a node set with (dynamic) node attributes.	defineNodes
Estimate a model	estimate
Diagnostic functions	examine examineChangepoints examineOutliers
International bilateral fisheries treaties (1960-1970)	bilatchanges bilatnet contigchanges contignet Fisheries_Treaties_6070 gdpchanges regchanges sovchanges states
Gather preprocess data from a formula	GatherPreprocessing
Link dynamic events to a nodeset or a network	linkEvents linkEvents.default linkEvents.network.goldfish linkEvents.nodes.goldfish
Extract log-likelihood from a fitted model object	logLik.result.goldfish
Methods for 'goldfish' objects.	print-method print.dependent.goldfish print.network.goldfish print.nodes.goldfish print.preprocessed.goldfish print.result.goldfish print.summary.result.goldfish
RFID Validity dataset	known.before participants rfid RFID_Validity_Study video
Social evolution of a university dormitory cohort	actors calls friendship Social_Evolution
Methods to update a nodes or network object	as.data.frame.nodes.goldfish as.matrix.network.goldfish update-method